Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
add_binary() (gpmap.gpm.GenotypePhenotypeMap method)
add_n_mutations() (gpmap.gpm.GenotypePhenotypeMap method)
B
BaseErrorMap (class in gpmap.errors)
BaseSimulation (class in gpmap.simulate.base)
binary (gpmap.gpm.GenotypePhenotypeMap attribute)
,
[1]
build() (gpmap.simulate.base.BaseSimulation method)
(gpmap.simulate.fuji.MountFujiSimulation method)
(gpmap.simulate.nk.NKSimulation method)
C
c4_correction() (in module gpmap.stats)
complete_data (gpmap.gpm.GenotypePhenotypeMap attribute)
corrected_std() (in module gpmap.stats)
corrected_sterror() (in module gpmap.stats)
coverage() (in module gpmap.stats)
D
data (gpmap.gpm.GenotypePhenotypeMap attribute)
E
encoding_table (gpmap.gpm.GenotypePhenotypeMap attribute)
F
farthest_genotype() (in module gpmap.utils)
field_strength (gpmap.simulate.fuji.MountFujiSimulation attribute)
find_differences() (in module gpmap.utils)
from_dict() (gpmap.gpm.GenotypePhenotypeMap class method)
from_json() (gpmap.gpm.GenotypePhenotypeMap class method)
from_length() (gpmap.simulate.base.BaseSimulation class method)
(gpmap.simulate.fuji.MountFujiSimulation class method)
G
GenotypePhenotypeMap (class in gpmap.gpm)
genotypes (gpmap.gpm.GenotypePhenotypeMap attribute)
genotypes_to_binary() (in module gpmap.utils)
genotypes_to_mutations() (in module gpmap.utils)
get_all_possible_genotypes() (gpmap.gpm.GenotypePhenotypeMap method)
get_base() (in module gpmap.utils)
get_encoding_table() (in module gpmap.utils)
get_missing_genotypes() (gpmap.gpm.GenotypePhenotypeMap method)
(in module gpmap.utils)
gpmap.errors (module)
gpmap.gpm (module)
gpmap.simulate (module)
gpmap.simulate.base (module)
gpmap.simulate.fuji (module)
gpmap.simulate.hoc (module)
gpmap.simulate.nk (module)
gpmap.stats (module)
gpmap.utils (module)
H
hamming (gpmap.simulate.fuji.MountFujiSimulation attribute)
hamming_distance() (in module gpmap.utils)
HouseOfCardsSimulation (class in gpmap.simulate.hoc)
I
index (gpmap.gpm.GenotypePhenotypeMap attribute)
ipywidgets_missing() (in module gpmap.utils)
K
keys (gpmap.simulate.nk.NKSimulation attribute)
,
[1]
L
length (gpmap.gpm.GenotypePhenotypeMap attribute)
length_to_mutations() (in module gpmap.utils)
list_binary() (in module gpmap.utils)
lower (gpmap.errors.BaseErrorMap attribute)
lower_transform() (in module gpmap.errors)
M
map() (gpmap.gpm.GenotypePhenotypeMap method)
missing_data (gpmap.gpm.GenotypePhenotypeMap attribute)
MountFujiSimulation (class in gpmap.simulate.fuji)
mutant (gpmap.gpm.GenotypePhenotypeMap attribute)
mutations (gpmap.gpm.GenotypePhenotypeMap attribute)
mutations_to_encoding() (in module gpmap.utils)
mutations_to_genotypes() (in module gpmap.utils)
N
n (gpmap.gpm.GenotypePhenotypeMap attribute)
n_replicates (gpmap.gpm.GenotypePhenotypeMap attribute)
nk_table (gpmap.simulate.nk.NKSimulation attribute)
,
[1]
NKSimulation (class in gpmap.simulate.nk)
P
phenotypes (gpmap.gpm.GenotypePhenotypeMap attribute)
R
random_mutation_set() (in module gpmap.simulate.base)
read_csv() (gpmap.gpm.GenotypePhenotypeMap class method)
read_dataframe() (gpmap.gpm.GenotypePhenotypeMap class method)
read_excel() (gpmap.gpm.GenotypePhenotypeMap class method)
read_json() (gpmap.gpm.GenotypePhenotypeMap class method)
read_pickle() (gpmap.gpm.GenotypePhenotypeMap class method)
roughess_dist (gpmap.simulate.fuji.MountFujiSimulation attribute)
roughness (gpmap.simulate.fuji.MountFujiSimulation attribute)
roughness_dist (gpmap.simulate.fuji.MountFujiSimulation attribute)
roughness_width (gpmap.simulate.fuji.MountFujiSimulation attribute)
S
sample_phenotypes() (in module gpmap.utils)
scale (gpmap.simulate.fuji.MountFujiSimulation attribute)
set_order() (gpmap.simulate.nk.NKSimulation method)
set_random_values() (gpmap.simulate.nk.NKSimulation method)
set_stdeviations() (gpmap.simulate.base.BaseSimulation method)
set_table_values() (gpmap.simulate.nk.NKSimulation method)
StandardDeviationMap (class in gpmap.errors)
StandardErrorMap (class in gpmap.errors)
stdeviations (gpmap.gpm.GenotypePhenotypeMap attribute)
T
to_csv() (gpmap.gpm.GenotypePhenotypeMap method)
to_dict() (gpmap.gpm.GenotypePhenotypeMap method)
to_excel() (gpmap.gpm.GenotypePhenotypeMap method)
to_json() (gpmap.gpm.GenotypePhenotypeMap method)
to_pickle() (gpmap.gpm.GenotypePhenotypeMap method)
U
unbiased_std() (in module gpmap.stats)
unbiased_sterror() (in module gpmap.stats)
unbiased_var() (in module gpmap.stats)
upper (gpmap.errors.BaseErrorMap attribute)
upper_transform() (in module gpmap.errors)
V
values (gpmap.simulate.nk.NKSimulation attribute)
,
[1]
W
wildtype (gpmap.gpm.GenotypePhenotypeMap attribute)
wrapper() (gpmap.errors.BaseErrorMap method)
(gpmap.errors.StandardDeviationMap method)
(gpmap.errors.StandardErrorMap method)
gpmap
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